Category: Barbara

Sunday, 27 November 2011

08:56 – Barbara is due back this afternoon. Colin and I will celebrate. I will admit that I rewatched some stuff while she was gone. The final three episodes of Firefly, Serenity, and the fourth series of Blackadder. Right now, I’m doing laundry. A load of towels and a load of Barbara’s work clothes. The regular dark and white loads can wait until she gets home.

I’ve been trying to teach Colin not to chase cats. I’ve explained to him that they’re really pretty much just small, incompetent, ugly dogs and that he should feel pity for them rather than chase them. But this morning on our walk, Colin noticed a cat in the bushes only a couple meters from where he was standing. He went on alert, the cat bolted, and Colin was off in pursuit. Fortunately, I locked the leash before he’d gotten more than about two steps or he’d have pulled me into the bushes.

When we got home, I explained things to him: “Look, you’re a dog. A dog! Your natural prey is large animals. You and your buddies can drag down an elk or a moose and rip it to shreds, for heaven’s sake. Your jaws can bite a broomstick in half. That pathetic little creature you were chasing is a cat. It has tiny, weak little jaws. Its natural prey is mice. Even a good-size rat with an attitude is more than a match for it. Why do you think they breed three-kilo terriers as ratters? And you’re about ten times that size. It’s beneath your dignity to chase a pathetic loser cat.” Colin seemed to understand. We’ll see.


12:41 – The theme music of the fourth series of Blackadder started with a couple bars of The British Grenadiers, one of those marches that everyone recognizes when they hear it, but almost no one knows the name of. I, of course, sang the first couple bars in my basso profundo as each episode started:

Some talk of Alexander, and some of Hercules
Of Hector and Lysander, and such great names as these.

So I just searched YouTube for those lyrics, and got a hit. ARRRGHH. Whoever the guys are singing this, they mispronounce a significant portion of the lyrics. My favor is “toe, row, row, row, row, row”, which refers to lining up on parade (toeing the row), and should be pronounced with all long oh’s. Instead, they misspell “toe” as “tow” and then proceed to pronounce both toe and row as in bow-wow. Then they mangle “fusee” into “fuze” and manage to use the French pronunciation for “glacis”, glaw-zee, rather than the proper British, glay-siss. That’s particularly ironic since they made a politically-correct alteration to the original lyrics. We now hear “We throw them from the glacis, about the enemies’ ears” rather than the original “We throw them from the glacis, about the Frenchmen’s ears”, which doesn’t even scan. Geez.

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Saturday, 26 November 2011

09:37 – Barbara is due back tomorrow afternoon, so tonight’s my last chance for wild women and parties. No luck so far.

I’m still working on the chapter on fungi and lichens. I’d forgotten how much I hate biological taxonomy. When Barbara and I were taking biology classes in junior high school, fungi were still classified as plants. Then in 1969 Whittaker proposed the five-kingdom system that put fungi in their own kingdom, which they richly deserved. For the next 20 years, everything went swimmingly well, until DNA analysis pretty much wiped out morphology-based taxonomies, which really messed everything up.

Imagine you had to classify four people under the old morphological taxonomy. Individuals A & B appear Nordic–very light skin, blond hair, blue eyes. Individuals C & D appear sub-Saharan African–very dark skin, brown hair, and brown eyes. Under the obsolete morphology-based taxonomy, individuals A & B clearly belong together, as do individuals C & D. But then DNA analysis comes into play, showing that individuals A & D are more closely related to each other than either is to either B or C, and that individuals B & C are more closely related to each other than either is to either A or D. So, in the new DNA-based taxonomy, individuals A & D are in one group, while individuals B & C are in another group. It makes sense scientifically, but it is non-intuitive to say the least. (Obviously, all four of these individuals are actually members of the same species and subspecies, but the point remains.)

In a more accurate example, fungi have always been considered more closely related to plants than to animals. In fact, most biology books, including recent ones, treat mycology as a sub-discipline of botany. But the reality, based on DNA analysis, is that fungi are much more closely related to animals than they are to plants. Geez.


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Wednesday, 23 November 2011

10:10 – Barbara took off this morning on a trip to Pigeon Forge, Tennessee with her parents, sister, and sister’s husband. They plan to spend several days going to shows and shopping at the outlet malls. They rented a Toyota handicapped-accessible van to make it easier to handle Barbara’s dad’s wheelchair. They’ll be back Sunday. I told Barbara I’d watch 20 or 30 episodes of Despicable Housewives while she’s gone and then tell her what happened when she gets back. The truth is, I probably won’t turn on the TV while she’s gone. I’ll work during the days and read during the evenings. Well, read and throw the ball for Colin. Over and over and over.

I’m still working heads-down on the biology book. I sent the protists chapter to my editor this morning, and am currently working on a chapter about fungi and lichens.

Meanwhile, during the last couple of weeks, the euro crisis has gone from desperate to catastrophic. Italy and now Spain are on the verge of needing bailouts to avoid defaults, and there’s no money there to bail them out. Belgium isn’t far behind, and France maintains its AAA rating in name only. The FANG nations are now the G nation, with Finland, Austria, and the Netherlands coming under the gun. The ECB has reached and passed its limit in terms of its willingness to buy Italian and Spanish bonds, and without that subsidy Italian and Spanish bond yields will skyrocket from their already-catastrophic 7% levels. Private investors are no longer willing to risk their money in sovereign bonds or private bonds from any EU country other than Germany, and they’ve begun to be leery even of German bunds. The IMF and the BRIC nations have basically told the EU that it’s on its own and it can’t expect any IMF/BRIC bailouts. The US has tossed diplomacy aside, told the EU not to expect any financial support from the US, and is now ordering the EU in no uncertain terms to DO SOMETHING. The trouble is, there’s really nothing to be done, and even if there were, Germany is not willing to pay for it. We’re watching the collapse of the eurozone and the EU itself, and the timeframe is now weeks rather than months. This is not going to be pretty.


13:42 – Oh, my. Forget what I just said about Germany being the last FANG nation left standing. Germany–Germany!–just suffered a failed bond auction. Germany offered €6 billion worth of bonds, but private investors were willing to buy only about 60% of them, leaving the central bank having to buy the rest. Granted, the interest rates were low, at about 2%, but even so. This was the worst auction of German bonds in the euro era. At this point, it’s clear that investors don’t want even German bunds, perceiving (correctly) that Germany is in deep, deep trouble.


14:38 – Actually, I think I will watch something while Barbara is away. We started watching the BBC series, Survivors, on Netflix streaming a couple of months ago, but we watched only the first episode. Barbara found it grim and depressing, and I could tell she really didn’t want to watch any more of it. But it’s still in our queue, and I should be able to get through the remaining 11 50-minute episodes while she’s away.


15:46 – Ah, I wondered how long it would be before this shoe dropped. After watching the concessions given to Greece, it was only a question of time before other bailed out nations demanded that kind of favorable treatment retroactively. The only thing I wasn’t sure of was whether it’d be Portugal or Ireland first. Well, it turns out to be Ireland. Can Portugal be far behind?

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Monday, 21 November 2011

10:53 – Over the weekend, Barbara and I got a good start on making up a batch of 28 chemistry kits. The chemical bottles have to be divided into groups to comply with hazardous material shipping regulations. We finished up Group D, which contains the 26 unregulated chemicals. Those don’t require the caps to be taped or shrink-wrapped. All 26 of them simply go into a plastic bag–one of the kind used in supermarkets–which is then tied off.

Groups A (five strong acids), B (three strong bases), and C (four flammable liquids) each require the caps to be taped or otherwise sealed, and each group has to go into its own sealed plastic bag. Then one each of bags A, B, C, and D go into yet another plastic bag with a large scoop of vermiculite (to absorb leaks). Doing all that qualifies the kit to ship under section 173.4 (small quantity exemption), which means the kits can ship via USPS Priority Mail (air) rather than having to go ORMD Parcel Post (ground).


Barbara is getting ready to leave Wednesday on a Thanksgiving trip with her parents. She returns late Sunday. Colin and I are planning wild women and parties while she’s gone.

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Friday, 4 November 2011

08:27 – Here’s the final front cover image for the biology book. There may be a few changes to the text, but otherwise this is pretty much what it’ll look like. Thanks to Mark at O’Reilly, who took the cover image I shot and did his Photoshop magic on it to get rid of the lighting flaws and other artifacts.

About the only change I suggested other than minor tweaks to the text was the background color. The chemistry book uses blue, and I thought it was obvious that the biology book should use green. And the forensics book, once we get around to actually publishing it, should be red (or at least maroon). Physics, when we eventually do that one, should be black.


Barbara worked a full day yesterday, and was delighted to do so. Unexpectedly, Colin was no worse than usual. True, he did pester me constantly to go out, but there was nothing new there. Colin did disappear briefly while we were on a walk. Like all Border Collies, Colin wants to herd anything that moves. This time of year, on breezy autumn days, he has his work cut out for him, herding blowing leaves.

The incident occurred as we were returning from our walk, approaching our house. Our next-door neighbors have a huge pile of leaves at the curb. As we approached it, Colin took off in pursuit of a blowing leaf. He went airborne just short of the leaf pile, and plunged into it. So, there I stood, holding a roller leash that extended into the leaf pile, with no dog visible at all. After a moment, the leaf pile started to ripple and shift, and a Border Collie pup burst out the other side. In his mouth, he carried one leaf. I can’t swear that it was the same leaf that he took off in pursuit of, but I suspect it probably was.


I was working on a new group of lab sessions yesterday, and I couldn’t decide what to name the chapter. As I mentioned to Barbara later, as a librarian she’s used to a well-defined taxonomy that doesn’t change other than to make room for new subjects. Biological taxonomy, on the other hand, changes like dreams, particularly with the advent of DNA analysis. A species may be moved from one genus to another, or indeed may be assigned as the sole member of its own new genus. A genus may move, in whole or in part, from one phylum to another, and even phyla may be moved from one kingdom to another. Even the framework changes. What is a kingdom in one taxonomic system may be a sub-kingdom or even a phylum in another. For that matter, some scientists make a convincing case that the whole kingdom system is invalid and that if we are to have a valid taxonomy it must be on a monophyletic basis. But the real problem is that life is messy and doesn’t fit itself into a convenient two-dimensional matrix. I suppose it might eventually be possible to classify all life in an n-dimensional matrix, but I sure wouldn’t want to attempt it.

Oh, yeah, my chapter title. It started out “Investigating Protista”, changed to “Investigating Protozoa”, and then changed again to “Investigating Protists”. I finally settled on “Investigating Protista/Protozoa/Protists”.


14:45 – I’ve sometimes posted Pat Condell videos here, often noting that I generally agree with Pat but that he’s a bit mealy-mouthed for my taste. Actually, I’m sure that Pat hates and despises islam as much as I do, as evidenced by his latest video.

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Thursday, 3 November 2011

08:28 – I drove Barbara to an appointment with her doctor yesterday. Barbara drove us home, approved to drive again and return to work. She just left for work, making joyful noises.


The Greek government will likely collapse this week, probably after a vote of (no) confidence tomorrow. Papandreou is down to 149 of 300 seats, and it’s by no means certain that all of those 149 will vote to support him. Papandreou’s finance minister and heir presumptive, Evangelos Venizelos, is now in open rebellion against Papandreou, but again it’s by no means certain that Venizelos would be able to form a new government. What’s really worrisome is that Papandreou has just sacked and replaced the top officer corps of the Greek military, presumably because he fears a military coup is at least possible, albeit not probable at this point. Meanwhile, EU officials are now talking openly about the departure of Greece and the breakup of the eurozone and probably the EU itself, and Italian bond yields reached 6.4%.


12:48 – And now I see that Papandreou has withdrawn his call for a referendum. Merkozy made it clear that the gloves were coming off, not least by announcing that Greece would not receive the sixth and final aid tranche, due to be paid this month, unless Greece did exactly what it had been ordered to do. Without that €8 billion payment, Greece will not be able to pay government employee salaries and pensions, which means Greece would likely be in full revolution soon after the first payment is missed. Merkozy also made it abundantly clear to Papandreou that the referendum announcement was the final straw, and that they were fully prepared to expel Greece from the eurozone. Because it is technically and legally impossible to expel a nation from the eurozone without also expelling it from the EU–actually, there’s no legal mechanism to expel a nation, period, but the one implies the other and Merkozy has certainly shown they have no respect for EU treaties or laws–Greece would find itself not just being forced to convert overnight to the new drachma, but also cut off from all of the benefits of EU membership, such as free trade within the EU.

Not surprisingly, the Greeks are back-pedaling fast, but it’s probably too late for that. Even the mention of a Greek referendum was the small shove that was needed to set the eurozone in particular and the EU in general toppling. Even the fact that the new head of the ECB announced a 25-point cut in interest rates to 1.25% and promised to keep subsidizing Italian and Spanish bonds isn’t going to help stop the collapse. At this point there’s only one solution remaining: the ECB has to start printing euros by the boatload to allow that massive pile of sovereign debt to be paid off in inflated euros. Of course, if there’s one thing Germany won’t stand for, it’s inflating the euro. If that begins to happen, you can be sure that Germany will revert to its own currency, quickly followed by the rest of the FANG nations, leaving the southern tier, including France and Belgium, twisting in the wind. So, one way or the other, it’s a default for sure.

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Sunday, 30 October 2011

08:11 – Barbara goes to the doctor for a follow-up visit this week. She’s really hoping he’ll approve her to drive and return to work. She’s still in some pain, but she’s stopped taking the oxycodone and is now taking tramadol. If I were her doctor, I’d approve her to return to work.


The blizzard that hit the northeast didn’t make it this far south. But we had cold rain Friday night and yesterday morning and lows last night about a degree above freezing, so we just missed it. As has been true of all our Border Collie pups, the cold weather invigorates Colin, not that he needs any invigorating. For the last couple of days, he’s been charging around disregarding his leash, sometimes nearly pulling me off my feet. We use a long roller leash, and Colin learned very early exactly how long it was. Ordinarily, he knows he’s about to run out of leash and stops before it jerks him to a stop. Lately, he’s been ignoring that.

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Saturday, 29 October 2011

10:04 – Barbara continues to improve. She’s even taking Colin for short walks down the block and yesterday while I wasn’t looking she rolled the trash cart back down the driveway. She goes to the doctor next week for a follow-up visit, and I suspect he’ll approve her to drive again and return to work. She’s going stir-crazy here. Of course, Colin is going to be a problem because he’s now used to having her home all day every day.


Yesterday I finished up the group of lab sessions on microorganisms and started on a group of lab sessions on genetics. Right now, I’m working on a lab about Mendelian traits and inheritance. There are actually relatively few pure Mendelian traits in humans, but one of them is a classic. The ability to taste phenylthiocarbamide.

Fortunately, I also did a self-sanity check. Beginning biology students often make the false assumption that dominant and recessive Mendelian traits correlate to the percentages of individuals in a population that exhibit the dominant and recessive phenotypes. In other words, a high percentage of individuals exhibit the dominant phenotype and a much small percentage the recessive phenotype. A moment’s thought establishes that’s not the case, at least for anyone who’s aware that Huntington’s disease is a dominant Mendelian trait.

But I made that exact false assumption with regard to Colin and his prick ears, assuming that floppy ears in dogs are Mendelian dominant and prick ears recessive. In fact, floppy ears are a recessive Mendelian trait. The fact that probably only one in ten thousand Border Collies has prick ears doesn’t indicate that prick ears are recessive, but merely that Border Collie breeders have selectively bred a population of Border Collies that are almost entirely recessive with respect to ear conformation. (Not that they were selecting for ear type specifically, but sometimes something you don’t care about one way or the other is part of the package that you’re breeding for.)

Now the only problem is that I don’t remember either Colin’s mother or father having prick ears. Hmmm.


10:42 – Duncan was a giant among Border Collies, standing about 4″ (10 cm) taller than other large males and weighing half again as much despite the fact that there was no fat on him. When Duncan was two or three years old, we took him to a Carolina Border Collie Rescue event held at a farm owned by one of the volunteers. There was a large open field and a herd of about 100 Border Collies running around in it. We could pick out Duncan instantly because he towered above all of the other BCs, except one who was even larger than he was. (Despite the fact that Duncan was registered purebred, we always suspected that he might have some English Shepherd in his bloodlines.)

Barbara just got out a photo of Duncan standing on our front porch that showed the line of his back was at the line of mortar above the seventh row of bricks. She then took Colin out on the front porch while I stood back to see the level of his back relative to the bricks. At eight months old, Colin is already taller than Duncan was as an adult. He’s going to be a very big boy.

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Monday, 24 October 2011

08:41 – Costco run and dinner yesterday with Mary and Paul. Barbara did very well.


If you don’t like to be frightened, turn away now.

This graphic, from this article, makes clear that sovereign debt, scary as it is, is only a part, often a small part, of the total indebtedness of the world’s major economies.

Roy Harvey sent me a link to this article by Ambrose Evans-Pritchard, whose work I’ve been reading for years. Although Evans-Pritchard buys into Keynesian arguments a bit too much for my taste, in general he’s one of the few MSM writers who actually gets it. He’s a journalist of the old school, and there aren’t many of them left.

In this article, Evans-Pritchard makes the same argument that I’ve been making for some time now, that the US, although hurting, is set to come roaring back more dominant economically than ever. As he concludes, “The 21st Century may be American after all, just like the last.” Indeed.


09:24 – Oh, yeah. I should have mentioned that these numbers are only for formal contractual indebtedness. What they don’t include is unfunded pension and health-care liabilities, which are often much larger than formal indebtedness. Greece, for example, is usually reported to have sovereign indebtedness totaling 160% of GDP. That’s true as far as it goes, but once one adds in personal and business debt and unfunded pension/health-care liabilities, it’s more like 1600% of GDP. The major economies aren’t quite that bad, but unfunded liabilities at the federal and state levels as well as corporate unfunded liabilities still make formal indebtedness pale.

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Saturday, 22 October 2011

09:08 – Barbara is doing very well. It’s only been a little more than two weeks since her surgery, and she’s already getting around pretty well. She can’t wait to get back to work, although she’ll have to wait at least a couple more weeks for that. Meanwhile, she’s up and around the house and able to do light stuff. She cooked dinner the last two nights, and walked down the block with me yesterday to talk with Kim.


I just downgraded our Netflix account to streaming-only. Our DVD queue still has 100 or more discs in it, but they’re all low priority stuff. Meanwhile, our streaming queue is full of stuff that we actually want to watch. So, for the next few months we’ll watching streaming material and wait for more DVD-only stuff to accrue. Then we’ll go back to a 2- or 3-at-a-time disc plan and watch that stuff.

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